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Jackson, Philip L., and Charles L. Rosenfeld. "Erosional changes at Alsea Spit, Waldport, Oregon." Oregon Geology 49 (1987): 55-59.
Jacobsen, Ryan, Jonathan Nott, Eric Brown, Matt Weeber, and Mark Lewis. Assessment of western Oregon adult winter steelhead – redd surveys 2014 In Oregon Plan for Salmon and Watersheds Monitoring Report . Vol. no. OPSW-ODFW-2014-09., 2014.
Janousek, Christopher N., and Christina L. Folger. "Inter-specific variation in salinity effects on germination in Pacific Northwest tidal wetland plants." Aquatic Botany 111 (2013): p.104-111.
Janousek, Christopher N., and Christina L. Folger. "Variation in tidal wetland plant diversity and composition within and among coastal estuaries: assessing the relative importance of environmental gradients." Journal of Vegetation Science : Offical Organ of the International Association for Vegetation Science 25, no. 2 (2014): p.534-545.
Jefferson, Carol A.. Salt Marsh Vegetation Map of the Alsea Bay. [Florence, Or.], 1973.
Jefferson, Carol A.. Plant Communities and Succession in Oregon Coastal Salt Marshes. Ph. D. ed. Corvallis, Or.: Oregon State University , 1974.
Jewett, Jr., Stanley Gordon. The stoneflies (Plecoptera) of the Pacific Northwest In Oregon State Monographs. Studies in Entomology . Vol. no.3. Corvallis, Or.: Oregon State University, 1959.
Jewett, Stanley G.. "Limicolae of the State of Oregon." The Auk 46, no. 2 (1929): p.214-222.
Johnson, John A., Jean E. McCrae, and Oregon. Dept. of Fish and Wildlife. Bay Clam Data Series Report: 1991. Newport, Or.: Oregon Dept. of Fish and Wildlife, Marine Region, 1992.
Johnson, John A., and Oregon. Dept. of Fish and Wildlife. Bay Clam Data Series Report: 1997. Newport, Or.: Oregon Dept. of Fish and Wildlife, Marine Region, 1999.
Johnson, John A., Claire Wood, and Oregon. Dept. of Fish and Wildlife. Bay Clam Data Series Report: 1996. Newport, Or.: Oregon Dept. of Fish and Wildlife, Marine Region, 1997.
Johnson, Orlay W., Robin S. Waples, Thomas C. Wainwright, Kathleen G. Neely, William F. Waknitz, and Ted L. Parker. Status Review for Oregon's Umpqua River Sea-Run Cutthroat Trout In NOAA Technical Memorandum NMFS-NWFSC. Seattle, Wash.: U.S. Dept. of Commerce, National Oceanic and Atmospheric Administration, National Marine Fisheries Service, 1994.
Johnson, John A., Jean McCrae, and Oregon. Dept. of Fish and Wildlife. Bay Clam Data Series Report: 1992. Newport, Or.: Oregon Department of Fish and Wildlife, 1992.
Johnson, Marc, John Spangler, Ryan Couture, and David Noakes. "Can angler-caught brood improve catch rates in steelhead fisheries? [abstract]." American Fisheries Society Oregon Chapter. Abstracts – 55th Annual Meeting. (2019): p.67-68.
Johnson, John A., and Oregon. Dept. of Fish and Wildlife. Bay Clam Data Series Report: 1998. Newport, Or.: Oregon Dept. of Fish and Wildlife, Marine Region, 1998.
Johnson, Marc A., Michelle K. Jones, Matthew R. Falcy, John Spangler, Ryan B. Couture, and David L. G. Noakes. "Can angler-assisted broodstock collection programs improve harvest rates of hatchery-produced steelhead?." Environmental Biology of Fishes 106 (2023): p.1079-1092.
Johnson, John A., and Oregon. Dept. of Fish and Wildlife. Bay Clam Data Series Report: 1993. Newport, Or.: Oregon Department of Fish and Wildlife, 1994.
Johnson, Karen. A history of coho fisheries and management in Oregon through 1982 In Information Reports / Fish Division, Oregon Department of Fish and Wildlife. Vol. no.84-12. Corvallis, Or.: Fish Division, Oregon Dept. of Fish and Wildlife, 1983.
Johnson, Marc A., and Michael A. Banks. "Genetic structure, migration, and patterns of allelic richness among coho salmon (Oncorhynchus kisutch) populations of the Oregon coast." Canadian Journal of Fisheries and Aquatic Sciences 65 (2008): p.1274-1285.
Johnson, Orlay W., Mary H. Ruckelshaus, Stewart W. Grant, William F. Waknitz, Ann M. Garrett, Gregory J. Bryant, Kathleen Neely, Jeffrey J. Hard, and Northwest Fisheries Science Center(U.S.). Status review of coastal cutthroat trout from Washington, Oregon, and California In NOAA Technical Memorandum NMFS-NWFSC. [Seattle, Wash.]: Northwest Fisheries Science Center, 1999.
Johnson, Lyndal L., Gina M. Ylitalo, Mary R. Arkoosh, Anna N. Kagley, Coral Stafford, Jennie L. Bolton, Jon Buzitis, Bernadita F. Anulacion, and Tracy K. Collier. "Contaminant exposure in outmigrant juvenile salmon from Pacific Northwest estuaries of the United States." Environmental Monitoring and Assessment 124 (2007): p.167-194.
Johnson, John A., and Oregon. Dept. of Fish and Wildlife. Bay Clam Data Series Report: 1994. Newport, Or.: Oregon Dept. of Fish and Wildlife, Marine Region, 1995.
Johnson, Courtney B., and Steven R. Schell. "Adapting to climate change on the Oregon coast: lines in the sand and rolling easements." Journal of Environmental Law and Litigation 28 (2013): p.447-514.
Johnson, Steven L., James Harry Power, Derek R. Wilson, and James Ray. "A comparison of the survival and migratory behavior of hatchery-reared and naturally reared steelhead smolts in the Alsea River and estuary, Oregon, using acoustic telemetry." North American Journal of Fisheries Management 30 (2010): p.55-71.
Johnson, Steven L., Mario F. Solazzi, and Thomas E. Nickelson. "Effects on survival and homing of trucking hatchery yearling coho salmon to release sites." North American Journal of Fisheries Management 10 (1990): p.427-433.

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